PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_007680_jyqa.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25599.4 Da    PI: 8.4786
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_007680_jyqa.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.65.9e-271059251
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        +i+n + rqvtfskRr gi+KKAeELSvLCda++a+iifs tgkl+++s+
  Bv1_007680_jyqa.t1 10 KIDNITARQVTFSKRRRGIFKKAEELSVLCDADIALIIFSATGKLFDFSN 59
                        69**********************************************85 PP

2K-box401.6e-14861691598
               K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                         +  + +lakL ke+    +e+R+l+GedL+  +l+eL +Le+ + +sl+++ ++K + ++ +ie+lqk+ + l een++Lr+k+
  Bv1_007680_jyqa.t1  86 QLENSNLAKLSKEVADKSQELRKLKGEDLQGVDLEELLKLERLIGDSLSRVIDTKGKRIKHEIETLQKQGDILMEENQKLRRKM 169
                         555678999999999999****************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.623161IPR002100Transcription factor, MADS-box
SMARTSM004328.8E-36160IPR002100Transcription factor, MADS-box
CDDcd002652.07E-34269No hitNo description
PRINTSPR004043.9E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-29378IPR002100Transcription factor, MADS-box
PfamPF003193.6E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.90885175IPR002487Transcription factor, K-box
PfamPF014869.2E-1388169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MAREKIKIRK IDNITARQVT FSKRRRGIFK KAEELSVLCD ADIALIIFSA TGKLFDFSNC  60
RMKDILSRYT RQTKEEKQEE PFLELQLENS NLAKLSKEVA DKSQELRKLK GEDLQGVDLE  120
ELLKLERLIG DSLSRVIDTK GKRIKHEIET LQKQGDILME ENQKLRRKMI ALSQGRKPAI  180
LLDHSDTSTI HEQGQSSESI TNNGGPPLAE DDSSDTSLKL GLCLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_D8e-17270169MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C8e-17270169MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B8e-17270169MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_A8e-17270169MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1tqe_S1e-16170170Myocyte-specific enhancer factor 2B
1tqe_R1e-16170170Myocyte-specific enhancer factor 2B
1tqe_Q1e-16170170Myocyte-specific enhancer factor 2B
1tqe_P1e-16170170Myocyte-specific enhancer factor 2B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163168KLRRKM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN3564405e-41FN356440.1 Witheringia coccoloboides mRNA for MPF2-like (M201 gene), allele WIcoM201_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675143.11e-161PREDICTED: MADS-box protein JOINTLESS
SwissprotQ9FVC12e-79SVP_ARATH; MADS-box protein SVP
TrEMBLA0A0J8D6851e-161A0A0J8D685_BETVU; Uncharacterized protein
STRINGVIT_18s0001g07460.t017e-89(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-80MIKC_MADS family protein